CDS

Accession Number TCMCG051C45218
gbkey CDS
Protein Id XP_024444968.1
Location complement(join(6400419..6400478,6400587..6400731,6400932..6400973,6401061..6401113,6401204..6401626,6402444..6402635,6402720..6402808,6403247..6403348,6403445..6403663,6404222..6404603,6404708..6404886,6404973..6405081,6405437..6405454))
Gene LOC18107269
GeneID 18107269
Organism Populus trichocarpa

Protein

Length 670aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024589200.1
Definition probable NOT transcription complex subunit VIP2 isoform X1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category DK
Description transcription complex subunit
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K12605        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03018        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0000288        [VIEW IN EMBL-EBI]
GO:0000932        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0015074        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0017148        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0030014        [VIEW IN EMBL-EBI]
GO:0030015        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034249        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCGGCGTTACTTAATTCTTCTCTAAACGGATCAGCTTCAAATCTTCCAGATACCACGGGACGATCTTTTGCTACATCCTTCTCTGGTCAGTCTGGTGCAGCATCTCCTGTTTTTCATCACAGTGGAACTTTTCAAGGGCTGCATAATATTCATGGGAGCTTTAATGTACCCAACATGCCAGGAACACTTGCATCAAGAAACTCCACAGTGAACAACATTCCTTCGGGCGGGGTTCAACAACCAACTGGAAGTCTCTCCGGTGGAAGGTTTGCATCCAATAATCTTCCTGTTGGTCTCTCTCAGTTGTCACATGGTAGTTCCCATGGACATTCAGGGGTTACAAATAGAGGAGGTATAAGCGTTGTAGGAAATCTGGGATATGGTAGTAACACAAATGGAATTGGTGGTTCTATACCTGGAATTCTCCCAGCCTCTGCTGGAATAGGTAACCGGAATGCTGTTCCAGGTTTGGGGGTATCCCAAATTTTGGGTAATACAGGTCCAAGGATTACGAGTCCTGGAGGGACCATGGTATCTGGTGGGAACATTGGGAGAAGCTTAAGCACAGGTGGAGGACTATCTGTCCCTGGTCTTGCATCTCGTCTGAATTTAACTGCAAATAGTGGATCTAGCAGTTTAAGTTTGCAAGGACAAAATAGATTAATGGGTGGTGTGCTTTCACAAGGAAATCCACAGGTAATTCCTATGTTAGGAAACTCATACCATACTGCTGTTGGTCCTCTTTCCCAAAGCCATGTACCGGGTGTGAACAATCTCAGCTCTATGGGAATGGGAATGTTGAATGATGTGAACTCCAATGACATTTCCCCTTTCGACATTAACAATGATTTCCCTCAGTTGACAAGTCGTCCTAGTTCTGCTGGAGGGCCTCAAGGTCAATTGGGTTCACTACGAAAACCTGGTATAGGAGGTAGTCCCATTGTTCAACAAAGCCAAGAGTTCAGCATTCAGAATGAAGATTTTCCAGCTTTACCTGGATTTAAAGGTGGTAATGCTGATTATACAATGGATATGCATCAGAAAGAACAACTGCATGATAATACTATCTCAATGATGCAATCTCAGCACTTCTCTATTGGAAGATCTGCTGGGTTCAACTTAGGAGACACTTACTCATCATATCGTCCTCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACACTCCCCTGCTGTCAGTAGTAGCATCTCTTTTGCATCTATAAACAATCAAGATCTACATGATTCAGAAATATTTCCTTCTTCGCATTCGGCCTATCACCCACAGACAAGTGGACCACCTGGACTTGGTCTGAGACCTTTAAATTTGCCAAATACAGTATCTAGTGTTGGATCATACGACCAGCTCATCCAGCAGTATCAACACCCAAGCCATTCCCAGTTTCGACTACAACAAATGTCGGCTGTCAATCAACCATTTAGAGATCAGGGCATAAAATCCATGCAGGCAGCACAATCTGCGCCTGATCCATTTGGGTTACTTGGCTTGTTAAGTGTTATAAGGATGAATGATCCTGATCTGACCTCCCTGGCACTTGGGATTGATTTGACCACGCTTGGATTGAATTTGAATTCAACAGAAAATCTTCACAAGACTTTTGGCTCCCCATGGTCTGAAGAGCCCGCTAAGGGTGATCTTGAGTTCAATGTTCCAAAATGCTATTATGCTAAGCCACCACCTCCACTGGATCATCTTTACTTTTCAAAATTCTCGACAGAAACATTGCTTTATGCATTTTACAGCATGCCAAAAGATGAAGCTCAACTACATGCTGCCAACATACTTTATGAAAGAGGCTGGTTGTACCACAAGGAGCAACGGCGTTGGTTAAAAAGAGTACCGAACACAGAGCCACTTGTTAAAACGAGCGCATATGAGAGAGGGTCTTACCATTGTTTTGAACCAAATACATTTGAGATAAAGCTCCAGGAAAATTTCGTTCTCTATTATGAGATGGTGGAAAAGAGACCGAGCCTACCACATCATTAA
Protein:  
MSALLNSSLNGSASNLPDTTGRSFATSFSGQSGAASPVFHHSGTFQGLHNIHGSFNVPNMPGTLASRNSTVNNIPSGGVQQPTGSLSGGRFASNNLPVGLSQLSHGSSHGHSGVTNRGGISVVGNLGYGSNTNGIGGSIPGILPASAGIGNRNAVPGLGVSQILGNTGPRITSPGGTMVSGGNIGRSLSTGGGLSVPGLASRLNLTANSGSSSLSLQGQNRLMGGVLSQGNPQVIPMLGNSYHTAVGPLSQSHVPGVNNLSSMGMGMLNDVNSNDISPFDINNDFPQLTSRPSSAGGPQGQLGSLRKPGIGGSPIVQQSQEFSIQNEDFPALPGFKGGNADYTMDMHQKEQLHDNTISMMQSQHFSIGRSAGFNLGDTYSSYRPQQQQQQQQQQQHSPAVSSSISFASINNQDLHDSEIFPSSHSAYHPQTSGPPGLGLRPLNLPNTVSSVGSYDQLIQQYQHPSHSQFRLQQMSAVNQPFRDQGIKSMQAAQSAPDPFGLLGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSEEPAKGDLEFNVPKCYYAKPPPPLDHLYFSKFSTETLLYAFYSMPKDEAQLHAANILYERGWLYHKEQRRWLKRVPNTEPLVKTSAYERGSYHCFEPNTFEIKLQENFVLYYEMVEKRPSLPHH